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Pinning Down a Piece of Photosynthesis
… and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … Blaby, through what is now the  Community Science Program Functional Genomics proposal call, the JGI synthesized … structure of the protein related to its function inside the cell, Grosjean used the JGI-developed  guideRNA and Sequence …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The Science … approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the …
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Crysten Blaby-Haas
… at Berkeley lab. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working … joint user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … Hu F, Regulski M, Blaby IK, Ware D, Blaby-Haas CE. (2024) Functional diversification within the heme-binding …
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Doubling Down on Known Protein Families
Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach to … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops
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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Nearly 200 Terabases of data are expected to be generated for the accepted proposals, said Susannah Tringe, JGI User … transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals … toward generating “with unprecedented precision” the gene functional networks and regulatory networks of a single …
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JGI Scientists Pen Genome Watch Articles
Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … Laboratory, are sharing their expertise in environmental genomics by writing for the column Genome Watch in  Nature Reviews Microbiology …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … methods; shotgun metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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A Plant Root Atlas for Tracking Developmental Trajectories
… the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for …
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UC Merced Interns Reflect on Their JGI Summer Projects
… skills as well as build their network in the field of genomics and scientific research. The topics students worked … language processing techniques to categorize genetic information. Learn more about their work here in a series of … virtual events and technology enabled a fruitful experience for mentors and students alike. Tools like Slack, Google …
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