Results

RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes
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Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… challenges. But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to … done by synthesizing genes, pathways, and whole chromosomes for bioenergy, nutrient cycling and bioproduct … — to make them more user accessible Synthetic Biology Informatics Group : a team that develops data science tools …
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Mining Metagenomes for Cas Proteins
… the seminal Cas9 proteins cleave double-stranded DNA. Co-first author Lucas Harrington was a graduate student from … group mined the IMG/M system with its large collection of publicly accessible metagenomic datasets from a wide variety … discovery of thermostable Cas9 genes . The work also used resources at the National Energy Research Scientific …
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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Gene duplication, horizontal gene transfer, and trait trade-offs drive evolution of postfire resource acquisition in pyrophilous fungi
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Mapping the Earth’s Hidden Fungal Kingdom
… in perspective, the genus Aspergillus has been evolving for 82 million years, making it nearly 30 times older than … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … databases like MycoCosm , the JGI’s online fungal genomics resource platform, reveals a stark imbalance. More recently …
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