Results

Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … genome-resolved metagenomes and will be implementing new tools in KBase to tackle the bioinformatic challenges …
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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Socotra Island the forgotten fragment of Gondwana: Unmasking chameleon lizard history with complete mitochondrial genomic data
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Dealing with Drought: Uncovering Sorghum’s Secrets
Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 … stress. The first year’s results will be compared to data from additional years of sampling, which are currently …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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UC Merced Interns Reflect on Their JGI Summer Projects
… worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to … a fruitful experience for mentors and students alike. Tools like Slack, Google Docs, and GitHub enabled virtual …
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2024 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … Biosurveillance and Biopreparedness. With this plan as our guide, we’ll continue to enable basic science in support of …
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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A Complex Confection Decoded: Sugarcane Reference Genome
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … The reference genome of R570 is available on the JGI plant data portal,  Phytozome .   … The work (proposal: … (https://ror.org/04xm1d337), a DOE Office of Science User Facility and the DOE Joint BioEnergy Institute, are …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … and respond to changes in the environment. The Impact Dubbed “the” bioenergy tree, poplars are known for their … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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A Guide to Conquer the Biological Network Era Using Graph Theory
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