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Nikos Kyrpides
… (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program … Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the …
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FICUS-NERSC/KBASE
… functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center ( NERSC ) is to …
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Silver age of GOLD introduces new features
… Since its launch 25 years ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into a … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … scheme to better define the genomic information and ecosystems. These curated data are accessible on JGI data …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to … tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it to the … and lipid metabolism furthers the U.S. Department of Energy’s goal of producing sustainable fuels from …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since … it possible for researchers to get a close look at more ecosystems and organisms than ever before. In 2006, the JGI … Computing Project , the JGI — along with the National Energy Research Scientific Computing Center, Oak Ridge …
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JGI User Executive Committee Expands
… User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science … he’s interested in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback … also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary collaborations. On the …
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Biodesign
… synthesizing genes, pathways, and whole chromosomes for bioenergy, nutrient cycling and bioproduct applications.  The team has three subgroups: Synthetic Biology Lab : a user science …
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Sequencing Technologies & Products
… factor binding sites across entire genomes. This technology has been further scaled to a multiplexed DAP-seq …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… As the name suggests, there is metal in the hills, and it has legacy mining that goes back more than 100 years. And in … that we use as indices. So it’s really quite a broad ecosystem approach. And that led me to get even more … are projections for you. ALISON: This audio production has been brought to you as part of JGI’s month-long …
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Four Researchers Join JGI User Executive Committee
… Committee of the Joint Genome Institute, a Department of Energy user facility located at Lawrence Berkeley National … Bik is a recipient of the Community Science Program (CSP) New Investigator call. Through membership in the UEC, … a focus on microbiome sciences and fungal symbioses. He has worked closely with both the Fungal & Algal Program and …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… cousin. Ceratopteris richardii, or C-fern, specifically has been studied in plant research laboratories and plant … lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … in 2018 as part of its Community Science Program. The OGG has set out to generate high-quality genome assemblies and …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… engineering and biocatalyst design will target sustainable energy solutions, focusing on lignocellulosic thermophiles … of the innovative research  being proposed by this year’s CSP investigators,” said Tanja Woyke, Deputy Director of … including one previous New Investigator awardee.  The CSP Annual call is focused on large-scale genomic science …
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