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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
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Minimum Information about a Biosynthetic Gene cluster
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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
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Sequencing Technologies
… sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing … output while significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for … works best for applications. The team works hand in hand with the Project Management Office to help ensure the JGI’s …
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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric … and 16S sequencing. She also develops novel flow cytometry protocols for targeted recovery of specific microbes. …
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Waiting to Respire
… of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed … from marine samples. The research teams opted to collaborate on a single study, with Matheus Carnevali and …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to …
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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… and dominant populations in oxygen-poor environments without oxygen deep below ground. These archaea fix carbon … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … build immunity to viruses. To do so, they compared samples collected from an aquifer in 2012 and 2018 against a …
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