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A Plant Root Atlas for Tracking Developmental Trajectories
… and Uwe Ohler at   Humboldt Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly … Solutions for Energy and the Environment Workshop Report Released Berkeley Lab News:  Five Berkeley Lab Scientists …
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Hiroshi Otani
… joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity is focused on developing and implementing new technologies and …
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Trent Northen
Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research … programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy … is depth stratified, rainfall dependent, and is mediated by genomically divergent microorganisms. Nature Microbiology …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as liverwort, this was done to gain insights into gene … The team found that some of the adaptation strategies used by liverwort are also seen in flowering plants, or …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous oxide). … enzymes in the soil and who made them. Based on data reported in the April issue of Soil Biology and Biochemistry …
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Tina Clarke
Ms. Clarke joined the Lab in 2007 as the Sr. Human Resources Division Partner for the Joint BioEnergy Institute (JBEI) and in … (JGI). Tina serves in an HR advisory role to Division/Area management and supervisors to recommend solutions …
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Triggering Morel Fruiting
… in China and involving Francis Martin from the Institut National de la Recherche Agronomique (INRA) in France and Igor … Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when … culturally, and ecologically important fungi, widely prized as a culinary delicacy, but also because they influence …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help …
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Simon Roux
Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational … Coclet et al., 2023. Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how … environments? Now, a recent study published in Microbiome has uncovered that SAR324 encompasses four subgroups, adapted …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed … group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … through the JGI DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to …
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