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… another user facility at Berkeley Lab. geNomad is now accessible through the National Microbiome Data … can affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also affect ecosystems by … genomics of MGEs and their evolution at the cellular level, scientists can better understand ecosystem-wide processes. …

… new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up genomics analysis to … of computational biologists, bioinformaticians, computer scientists and biostatisticians. Through collaborations with … MetaBAT , an automatic metagenome binning software … Education … Selected Publications … Software …

A group led by JGI scientists have made strides in improving and applying a … hosts that users can select to be engineered. “Piloting access to this emerging technology with JGI users will … versatile engineering system that allows scientists to conduct genome-wide screens and explore biosynthetic pathway. …

… it was possible to identify specific attributes — such as heat resistance, fast growth rates, and an ability to … … This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed … was performed at the University of Colorado Cancer Center’s Genomics Shared Resource, which is supported by the Cancer …

… trait for domesticated crops because it leads to reduced harvest yields. Over thousands of years, farmers have … a large-scale genome infrastructure with a reasonably accessible system,” said Schmutz. “Building the pan-genome … their involvement; it’s something we wouldn’t have even started.”  The reference genome of Setaria viridis is …

… work results from a collaboration involving more than 200 scientists, researchers at the U.S. Department of Energy … called metagenome binning, we were able to reconstruct thousands of metagenome-assembled genomes (MAGs) … these samples, many of which come from unique, difficult to access environments, and invited these researchers to be …

… *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In fact, HudsonAlpha Faculty … Sarah:  How many plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, … in currently available 17 other species. And you can also access the differentially expressed genes and visualize …

… or else are interested in participating in the famous JGI-UC Merced internship program. …

JGI and co-organized with NIST,  the goal of the Viral EcoGenomics & Applications (VEGA) symposium was to bring … for the event photos. Keynote Speakers Katrine Whiteson , UC Irvine Chase Morgan , UC San Diego Britt Koskella , UC Berkeley Other Confirmed …

… intensifying collaborations in the fields of genomics, structural biology, bioimaging, and water research. The meeting … challenges.”  During the workshop UDE and Berkeley Lab scientists discussed a diverse range of topics related to … applications, for example, or the timely controlled start of a biochemical reaction which can then directly be …

Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data … California State University campuses for biotechnology education as part of a course-based undergraduate resource …