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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Plant Program
With collaborative user projects, the JGI’s Plant Program … environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A … improve our domesticated species.  The program supports the development of next-generation biofuels by studying …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … interest. Nature Methods paper coauthor Lee did the initial development of a streamlined workflow that reduces the time … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding …
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Ultraconservation identifies a small subset of extremely constrained developmental enhancers
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IMG Group
… and functional genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes … and exa- scales on multicore and many core architectures with the ultimate objective of facilitating omics-based scientific investigations. Development and maintenance of the Integrated Microbial …
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How to Target a Microbial Needle within a Community Haystack
… targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and … traditional shotgun metagenomics approach to learning more about environmental samples starts with researchers first … fixation protocols were also tested as part of the method development, and researchers found that ethanol treatment …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the potential of this collaboration stating, “We … individual workshops. Of common interest is the method development to study active sites or single cells in their …
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and … Stewarding resources theme. Evolving and growing the JGI workforce and culture simultaneously with the scientific and … support of our goals,” said Mouncey. “Creating transparency about our efforts is critical for enabling complementary and …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the JGI synthesis grant during a presentation that … driven his lab’s focus on guide RNA library generation and development and its applications. “I moved to UC Davis in …
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Forming Scientific Connections and Building Community
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … Watch the short video here to see what they had to say about their experiences and what they’ll take with them as … journey.” Mentors: Deze Kong & Yasuo Yoshikuni Project: “ Development of a multiplex genomic integration system for …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) … for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the virus and plasmid workflows for the …
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