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Work With the JGI! Tips for a Winning CSP Proposal
The JGI’s Community Science Program gives researchers access to … this episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda Harmon-Smith, who helps …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … Cited Researchers list, and has appeared on the list since 2020. …
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Viral Genomics Group
… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving … of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. … 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives … method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell sorting (FACS) to sort … a recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach …
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Data Ecosystem
… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its … annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and analyze data on scales … JGI and KBase are designated DOE Office of Science Public Reusable Research (PuRe) Data Resources are authoritative …
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DOE JGI Metagenome Workflow
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory … data integration and modeling This three-day joint user meeting will feature insightful presentations, dynamic … Biological and Environmental Research (BER) program.   … About the Organizers … Stefani Ferreira , administrative …
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Hydrothermal Vents and International Science: A Postdoc’s Visit to the JGI
… at King Abdullah University of Science and Technology (KAUST) in Saudi Arabia. …
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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope … microbiome activity levels.This functional assay lets us move beyond cataloging the genes of microorganisms and …
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Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
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Refining the Process of Identifying Algae Biotechnology Candidates
… ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae … feedstocks that can thrive in saltwater mitigates concerns about diverting resources such as arable land and fresh … are tiny but mighty. An analysis in the 2017 Bioeconomy Report estimated that the United States has the capacity to …
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