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2022 Progress Report
… (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory … Lab), is to become the leading integrative genome science user facility enabling researchers to solve the world’s …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as liverwort, this was done to gain insights into gene … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, …
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IMG/M 4 version of the integrated metagenome comparative analysis system
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome … tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene … and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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IMG/M: integrated genome and metagenome comparative data analysis system
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IMG/M: the integrated metagenome data management and comparative analysis system
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of … from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… down potential biomass sources in ways we are only just beginning to understand. A better understanding of rumen … around the world, encompassing 54 researchers from 14 organizations across nine countries. Learn more about the Hungate1000 work led by AgResearch collaborators …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the … CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) … your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled … viruses (from environmental metagenome samples) from IMG/VR , a database that is part of the Integrated Microbial …
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Microbial Genomics & Metagenomics (MGM) Workshop
… (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: …   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and …
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