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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by … degrade the plant biomass. In order to learn more about these regulatory networks in the model fungus  N. … and Development Program of Berkeley Lab, among other organizations. …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two … meetings were still a thing, i.e. in January. She talked about her  Community Science Project proposal with JGI, in which she’s studying a special kind of plant metabolism. This metabolism, called crassulacean acid metabolism, or …
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JGI Announces 2023 Community Science Program Awardees
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … nutrient cycling, and biogeochemistry. You can learn more about this year’s recipients on our Twitter. Samples were … function, plant and algal functional genomics, inter-organismal interactions, understanding natural communities …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month … much of the building waste. Once this program is running smoothly, the hope is that it could be implemented in other … Members from across Berkeley Lab gathered to learn more about planting and tending these shoots of their own. The …
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Katherine Louie
… the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based techniques, the … turnover, DNA-SIP for helping identify active micro-organisms within complex communities, and custom software for … 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, Kosina SM, Hu Y, Otani H, de Raad M, Kuftin AN, et al. Mass …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, … plant’s genetic variants with specific adaptation mechanisms they had identified. For example, in comparing how …
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2022 Progress Report
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory … Lab), is to become the leading integrative genome science user facility enabling researchers to solve the world’s …
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Fishing for Novel Cellulose Degraders
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and unknown. The challenge remains to learn more about what microbes are present in any given … cell sorting to sort cells into several small pools, followed by whole genome amplification and …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors … biosamples in GOLD. “Besides these, he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… down potential biomass sources in ways we are only just beginning to understand. A better understanding of rumen … around the world, encompassing 54 researchers from 14 organizations across nine countries. Learn more about the Hungate1000 work led by AgResearch collaborators …
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Computationally Classifying Fungal Lifestyles
… and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Dothideomycetes species, and also provides more information about speciation events. …
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Understanding Wildfire Recovery, Starting in Soil
… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way … from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a … identified in this study was the ability of these organisms to degrade aromatic compounds from burned material. This …
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