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… from plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar … with metabolomics analysis.  Q: Can you give us an idea about the scale of an average study? How many samples are … information for funding by JGI? A: The JGI is not a funding organization. Rather, it makes its sequencing, synthesis, …

Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with … of simplified soil communities with high and low carbon use efficiency across differing moisture treatments … … Submission … CSP Functional Genomics Submission … FICUS Example #1 … FICUS Example #2 …

… hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … 122% 2,140 2,184 102.1% Q4 2024 162.5 330.615 203% 2,164 2,208 102% *Includes Illumina and PacBio sequencing platforms. … Q2 is due to planned upgrade of the Laboratory Information Management System (LIMS) and temporary shut down of the …

… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … an endophyte, living between a plant’s root cells. The fungus is almost always found among and within poplar trees, and … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . …

After studying the mechanism of action of antifungal natural products and their derivatives during her … which she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position … as well as our Deputy of User Programs. Click to learn more about the program's areas of focus, major initiatives and …

Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) … Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data … for data quality and sharing, and data workflows and management best practices that have advanced the microbial …

JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley Lab. For … recruitment of a new JGI Director, and towards the strategic co-localization of JGI and KBase at the … is still good. “I noticed right away,” said Ellen Ford about Ray’s personal impact on her, “that you started …

… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … is estimated to be larger than any other single plant genus. Peatlands accumulate partially decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high …

… biology and genomics. Myco-Ed aims to integrate real scientific contributions/discoveries into undergraduate teaching … analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no programming knowledge or … Systems Biology Knowledgebase (KBase) is involved in the organization and development of Myco-Ed. Eventually assembly …

… this episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …

… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … synthesis of secondary metabolites, in line with the JGI’s strategic initiatives. These specialized compounds enable … information as well as of important descriptive metadata about each strain. “This has been a very fruitful …

… scale: fungi stretch a network of tendrils called arbuscules into a plant’s root cells, and both organisms … called single nuclei RNA sequencing, the researchers identified different cell types within  M. truncatula root … circular capture areas roughly 55-microns in diameter — about the width of a human hair. At such resolution, this …