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Accelerating Metagenomics Discoveries with Deep Learning
… from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep learning for … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Green Algae Reveal One mRNA Encodes Many Proteins
… – in two species of green algae, Chlamydomonas reinhardtii and Chromochloris zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like mistakes by the gene … Laboratory, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by altering their growth … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., …
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Yasuo Yoshikuni
… to harness the power of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This program has supported … production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, … community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year … support of our goals,” said Mouncey. “Creating transparency about our efforts is critical for enabling complementary and …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   … large number of secondary metabolites yet to be discovered and their biosynthetic logics to be understood, accessing … a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from …
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JGI at the AGU Fall Meeting
… the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some … proposals: Collaborate With a U.S. DOE User Facility: Learn About Available Expertise and Resources, Open-Call … State University (short talk): “Predators of the Deep: virus-host dynamics in the terrestrial subsurface” 2pm …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … His research activity is focused on developing and implementing new technologies and methodologies that … Kunakom S, Otani H, Udwary DW, Doering DT, Mouncey NJ. Cytochromes P450 … J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the next … vegetation. In return for their services, bees eat plant nectar and pollen. Nectar is an easily absorbable … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of …
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