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… In a special issue of mSystems , out May 14, 2019, JGI researchers are among … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … Simon Roux, a member of Eloe-Fadrosh’s Environmental Genomics group, makes a pitch for readers to get involved in …

… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …

… Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore … “JGI is one of the largest producers of environmental genomics data and has a strong reputation in the community,” …

… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, … DE-AC02-05CH11231. This work also received support from the Genomic Science Program in the U.S. Department of Energy, …

… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant … of polyploidy.” Evaluating Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the JGI’s  …

… University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package … Software …

… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley …

… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community out …

… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the next generation of flowering vegetation. In … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …

… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … than 50,000 copies of the MCP were identified in the metagenomic data, two-thirds of which could be assigned to viral …

… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …

… The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …