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… Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of regulon identification by in vitro transcription-sequencing (RIViT-seq) to … sets associated with functions like stress responses and cellular differentiation. The tough part is identifying the …

… Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …

… Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. “The … updated functionality, such as: The ability to select data by type or taxonomic group The ability to see, at a glance, … volunteering to participate in a user research session by contacting the JGI User Experience Group — once you …

… is depth stratified, rainfall dependent, and is mediated by genomically divergent microorganisms. Nature Microbiology … Award for Science and Engineering (PECASE) awarded by President Obama Dr. Northen currently serves as the Deputy Director of the Environmental Genomics and Systems Biology at Lawrence Berkeley National …

… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences … they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition mechanisms … capability of morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant litter and to …

… (epigenome).  In  Nature Ecology & Evolution , a team led by Robert Schmitz at the University of Georgia and including … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of … The work conducted by the US Department of Energy Joint Genome Institute, a DOE …

… — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and … has opened vast windows into specific activities catalyzed by microbial communities. By pairing RNA or DNA sequencing … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these …

… 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want … Like others, our turnaround time has been impacted by the pandemic. 3. Q: What instrument / method does the JGI … out through the roots, into the soil, and then picked up by the rhizosphere, then that takes a little bit longer.  A …

… This work was funded by the US-National Science Foundation grants OCE-0728391, …