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Tanja Woyke
… she also holds an Adjunct Scientist appointment at the Bigelow Laboratory for Ocean Sciences since 2012 and an … Scientific Achievement Advisory Board Member for Bigelow Laboratory for Ocean Sciences Single Cell Genomics … 35, 725-731. Mukherjee et al. 2017. 1,003 reference genomes of bacterial and archaeal isolates expand coverage …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. … his student’s contributions as reviewing close to 3,800 metagenomes to verify geographic locations and assign latitude …
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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and … From these assemblies, complete or near-complete population genomes were recovered—termed “metagenome-assembled genomes” …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Accelerating Metagenomics Discoveries with Deep Learning
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JGI Workshops at 33rd Fungal Genetics Conference
… Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 Fungal Genomes and Phenotypes" …
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MycoCosm Tutorial
… more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive …
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You Can Move, But You Can’t Hide
… Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the first version of … , which currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
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IMG/VR
… the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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