Results

JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
Learn more
The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
Learn more
Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
Learn more
Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first …
Learn more
Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She …
Learn more
Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor
Learn more
I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research … of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
Learn more
Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
Learn more
Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
Learn more
Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
Learn more
Progress Reports: 2002–2020
Click the cards below to view downloadable pdfs of previous Progress Reports from the Joint Genome Institute.  … FY20 Progress Report … FY19 Progress …
Learn more
Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) …
Learn more