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Better Living Through Bioenergy
… are a way to kick our addiction to fossil fuels. In this episode, we peek into how scientists Aindrila Mukhopadhyay and Steve Singer … research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint …
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Nandita Nath
Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal …
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Progress Reports: 2002–2020
… downloadable pdfs of previous Progress Reports from the Joint Genome Institute.  … FY20 Progress Report … FY19 Progress Report … …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant … Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and …
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Exploring the Diversity of the American Prairie’s Switchgrass
… switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. So, a team of scientists made an ambitious plan to begin to link the plant’s varying traits — height, biomass, …
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W. Berkeley Kauffman
Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of … utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists and engineers who received … Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial assemblies, revealing … Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s …
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