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Pyrosequencing Reveals High-Temperature Cellulolytic Microbial Consortia in Great Boiling Spring after In Situ Lignocellulose Enrichment
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a previous … to help researchers assess and improve the quality of metagenome-assembled viral genomes . The Impact The microbes …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … or transposons that can move to another location in the genome. Many plant pathogens such as the fungi that …
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JGI@25: Studying Sorghum’s Survival Skills
… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … and grow sorghum, but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for Sorghum bicolor . Since then, 2,993 publications, …
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Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Boosting Small Molecule Production in Super “Soup”
… Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of gene expression through genetic rewiring with CRISPR-Cas9 that enhanced their ability to redirect the carbon in the … first time CRISPR-Cas9 had been used to modify a cell’s  genome in order to create lysates with altered metabolic …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… unique array of chemicals not typically found in oceans or soils.  A recent study published in  The ISME Journal     … structures that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … them without previously known representatives). Of these, 89 contigs were considered to be complete genomes, and their …
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Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation
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