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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … the microbes there,” said Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in the …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella … it can thrive in the soil as a saprophyte, living off decaying organic matter, or as an endophyte, living …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… 10 times larger. And yet, while they are found everywhere, comparatively little is known about viruses, much less those … co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
Johnston for followup questions.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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