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… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) … The work conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …

… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from … relative of the oak. These fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every … the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER …

… and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … focused on the gene rich part of the genome by harnessing information from a sequenced related species – sorghum. The … identifying different variants on different chromosomes, information that can be used to assemble a more complex and …

… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are symbionts, rather than free-living organisms as had been originally thought. The Impact The …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … ch allenges. Methane emissions are a massive factor driving climate change. According to the Environmental …

… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint … planet’s nutrient cycles. While most organism’s genetic information is encoded in DNA, with RNA delivering the …

… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … methane and organic matter.  However, to get all of the information that SIP offers, researchers must take on a fairly … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these …

… The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, … events.  Looking ahead, scientists can use this information to assess what specific traits make older species … Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in Zostera marina …

… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community out …

… development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria did; contemporaries Melainabacteria and Sericytochromatia, members of the same clade … (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic strategies …

… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Almost all … an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also used …

… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex polysaccharides. Honey bees are invaluable … polysaccharides — the pectin and hemicellulose — are digested further along: first, the pectin, mainly by  … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …