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… carbon from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The … organic matter scavengers. This preliminary model aligns with several other studies on the potential effects of …

… postdoctoral fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed … MAGs later dubbed Saganbacteria. At the same time, working with researchers from the Bigelow Laboratory for Ocean … The research teams opted to collaborate on a single study, with Matheus Carnevali and Schulz sharing co-first …

… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also used …

… two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … down hemicellulose. The authors think this might have to do with the differences in lifestyle: honey bees need ample … and analyzing the honey bee gut metagenome, which was done with the help of the US Department of Energy Joint Genome …

… Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep … to become much simpler; instead of aligning sequences with popular, but computationally costly approaches such as … (inferred chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …

… CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) Carefully … and ensure your idea is aligned Discuss your proposal idea with JGI staff to clarify key points about JGI’s … submitting a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will …

… Creek Featuring a casual, candid, C-level panel discussion with local industry leaders: Arvind Gupta , Managing … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …

… Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …

… displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … tend to be dominated by prokaryotes (microorganisms without a defined nucleus). Colder waters nearer the poles, however, tend to favor eukaryotes ( microorganisms with a nucleus). These photosynthesizing eukaryotes, or …

… JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per library. … PI. We currently use the ‘Base Modification Analysis’ tool within PacBio SMRT link, which works well for 6mA and 4mC …

… under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and … interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on much more … happen to Phytozome v12 URLs after August 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be …

… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen … some of the current challenges faced by those using metagenomics to try to understand the far-reaching impacts of … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …