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An Automated Tool for Assessing Virus Data Quality
… virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality … and sulfur are themselves regulated by viruses in their environments. Environmental DNA sequencing can help … Nature Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of …
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PhycoCosm Tutorial
… by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, resulting in a … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Back to the Future! A Sorghum Story
… — and literal — roots could play a big role in our energy future. …
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Streamlining Regulon Identification in Bacteria
… functions is part of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … ensuring genes vital for growth and survival across various environments are expressed when their functions are needed. … This work was supported by the U.S. Department of Energy Office of Science under Contract No. DE-AC02-05CH11231 …
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A Plantiful Future: Xiaohan Yang
… Can plants help humans attain a renewable energy future? Can they help lock away more carbon? Xiaohan …
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Better Living Through Bioenergy
… biobased economy. They conduct research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… capabilities to enable great science that will help solve energy and environmental ch allenges. Methane emissions are a massive factor driving climate change. According to the Environmental Protection Agency , methane gas warms the …
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How Filamentous Fungi Sense Food
… present in plant biomass. This is of interest for bioenergy researchers looking to improve the industrial … Wu worked with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … Project. Funding for the project was also provided by the Energy Biosciences Institute and the Laboratory Directed …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… terabytes of data with MetaHipMer2. And the National Energy Research Scientific Computing (NERSC) has another …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… sequence from just a few pieces of DNA. Summary The extreme environments found in Yellowstone National Park include a … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The work was …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… they belonged. The team worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … were then isolated and sequenced by scientists at the Environmental Molecular Sciences Laboratory (EMSL), a DOE … fungi can’t fulfill by fixing nitrogen and using it as an energy source. No fungi are known to be able to do this. JGI …
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