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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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An Earth Month Look at Sustainability Efforts at the JGI
… program manager for  Sustainable Berkeley Lab (SBL). By 2030, Berkeley Lab  aims to cut its greenhouse gas emissions … to compost or recycling. That initiative is the result of a partnership with Sustainable Berkeley Lab, building on years … Doina Ciobanu generally works at a single-cell level as part of the JGI MicroScale Applications team. But on a …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … high-quality reference sequence of the complex switchgrass genome. The reference genome built off more than a decade of …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI Workshop at SIMB NP Meeting
… a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … research projects, hone science presentation skills, and participate in professional development enrichment … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Cataloging Lineage Specific Conserved Genes in Giant Viruses …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… do DNA design and synthesis work. This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the JGI DNA Synthesis Science Program, which started in 2012, and what they’ve discovered through their … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, … Escobar (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams … Microbial Genome Program head Tanja Woyke of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …
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Fishing for Novel Cellulose Degraders
… Designed with feathers or wires to mimic an insect or a particular movement, each of these lures are the bait … by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to sort cells into several small pools, followed by whole genome amplification and shotgun sequencing. The team first …
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