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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … Simon Roux, a JGI research scientist in the  Environmental Genomics group . Training the Search Tool Inoviruses are … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … genetic blueprint has long been a significant challenge in genomics. Enter GenomeOcean, a powerful generative model  … forms of communication. This intricate code carries the information necessary for life's processes, making it a …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was … purpose of this CSP is to better understand methane cycling in mangrove wetlands in south Texas,” he explained. “In …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, …
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What Happens Underground Influences Global Nutrient Cycles
… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … below the ground, influencing the production of microbial greenhouse gases and volatile organic compounds. This was … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly … as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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