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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 … is the interim director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, …
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Nandita Nath
Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
Hoppy Hour @ Calicraft Brewing, Walnut Creek Where:  Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek … Johnston for followup questions.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The … majority of the ground cover in peatlands. These boggy ecosystems are acidic and have very little oxygen, which is … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Progress Reports: 2002–2020
Click the cards below to view downloadable pdfs of previous Progress Reports from the Joint Genome Institute.  … FY20 Progress Report … FY19 Progress …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … Scientists with the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … more active in fixing and metabolizing nitrogen, a key ecosystem nutrient. The Impact This study is the first to dig … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from …
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