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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Crops as Tough as World Cup Turf
… need corn, sorghum and other crops to grow well in worse conditions: with more heat, less water and less fertilizer. Grasses do better in these conditions, so plant biologists James Schable, Guangchao Sun …
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Accelerating Metagenomics Discoveries with Deep Learning
… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to automatically … costly approaches such as BLAST and hidden Markov models (HMMs), “You just compute the distance between two …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors who … through the Biotech Partners program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & … Lab) hosted a pitch event promoting fully-supported summer research collaborations through the U.S. Department of … Faculty interested in developing proposals with JGI and Biosciences Area researchers should contact David Gilbert …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … standards.  A year later, her team used proteomics, genomics and transcriptomics to discover another advantage …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… the microbes there,” said Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the … database to include a dedicated section for viruses, so researchers around the world would have better, easier … in soil microbiomes could allow for more accurate ecosystem modeling. In a different vein, characterizing CRISPR defense …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
Congratulations to Tanja Woyke, who has been awarded the van … around the planet–through techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 … as Adjunct Scientist at the Bigelow Laboratory for Ocean Sciences and as Associate Adjunct Professor at the …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab … 100 were silent. Twenty years after the JGI united the genomics expertise of three national labs in one long … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome … and facilitates accurate and insightful comparative genomics studies. …
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Robert Bowers
Bob uses single-cell genomics and metagenomics to explore how microbes influence people and the environment. This includes studying the diversity, physiology and …
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