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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … proposal by allowing researchers to test a project on a smaller scale as a proof-of-concept or by allowing the …
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Katherine Louie
… of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen BP, … AN, et al. Mass Spectrometry for Natural Product Discovery. 2020.  Reference Module in Chemistry, Molecular Sciences and …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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Refining the Process of Identifying Algae Biotechnology Candidates
… multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater (halotolerant) … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Labs to screen, characterize, sequence and then analyze the genomes and multi-omics datasets for algae that can be used …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% … the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and …
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Benjamin Cole
… interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on …
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Doubling Down on Known Protein Families
… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … might those ‘unknown unknowns’ hold?  The team started with 8 billion metagenome genes from IMG (the study also …
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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … dependent on the other for required nutrients—is genome size. The obligate symbiont’s genome is often reduced … a dhesion and  r estriction  e ndonuclease domains—of up to 8,500 amino acids in length. These were actively synthesized …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… above. Described as a “river of grass” that stretches some 580,000 square miles across southern Florida, they encompass … cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … generation of scientists that will help shape all of our futures.” Proposing a Research Experience Benskin wanted to …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They looked …
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10 From JGI on the 2019 Highly Cited Researchers List
… 1% by citations for papers published and cited between 2008-2018.” Less than 6,300 Highly Cited science and social … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more … the minimum amount of information for an uncultivated virus genome, including the source, methods of identification of …
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