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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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JGI Announces 2026 New Investigator Portfolio
… Kumar Gautam, Gareth Gillard, Audrey Goeckner, Jennifer Goff, Sarah Gonzalez Henao, Yang Hai, Julia G. Harenčár, … N. Zepernick.    Each year, the JGI solicits novel research projects from PIs who have not led any previously … diverse ecosystems — from Antarctic soils and Icelandic hydrothermal systems to coastal wetlands and permafrost. …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … power of plants, and the lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in … which is something I didn’t even know existed before. Name: Deepika Gunasekaran Class Year: 2nd year graduate student in …
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Cultivating Symbiotic Antarctic Microbes
… The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes … cells, the first member of the Archaea isolated from Deep Lake, the coldest place on Earth known to support life, …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … a major transition of biology into data science.  Research in the Kyrpides group focuses on Microbiome Data …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … Q: How many PacBio metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … from Baja California north into Oregon and beyond. The disease is known more commonly as Sudden Oak Death or by its … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for … aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis improve the …
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JGI announces first round of 2023 New Investigator awardees
… is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing
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