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Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomiae
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Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… organisms can do. And we need the field’s context to see why it matters.” As his career progressed, Hungate has … these amazing technologies that the JGI has to identify and sequence who’s making what, that the context at a microscale … how they are evolving — and explained how his group uses metatranscriptomics and shotgun RNA sequencing to try to …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, …
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Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Sequencing and Analysis of the Entire Genome of the Mycoparasitic Bioeffector Fungus Trichoderma asperelloides Strain T 203 (Hypocreales)
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Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil
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RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
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