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User Executive Committee Charter
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to … ecosystems, including, respectively, the northern Lakes of Canada, the Laurentian Great Lakes, Lake Mendota and Lake Lanier were of particular …
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Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NALT)
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JGIota: The Algae Nicknamed ‘Chlamy’
… UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a … of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The reference …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more meetings and … mostly focused around how to best work together to achieve great success. “For the most difficult challenges, no one … idea was to put together a ‘Best of the Best’ genome sequence list, which I found utterly frustrating and …
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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … the JGI. Sevim’s work is part of an ongoing effort to build greater collaboration between JGI and scientists in the … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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Taking Stock of the Known and Unknown Microbial Space
… genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” The study, … a census of publicly available bacterial and archaeal sequences. Kyrpides heads the JGI’s Microbiome Data Science …
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Creating an Energy Market for Miscanthus
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Defining a Pan-Genome for Antarctic Archaea
… by studying the microbial communities in Antarctic lakes, some of which have salinities 10 times that of … Impact By collecting and sequencing dominant haloarchaeal sequences from six hypersaline lakes, researchers focused on … have been studying the haloarchaea that thrive in the very salty waters of Deep Lake to better understand how they’ve …
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JGI@25: The Little Alga That Could
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … sustainable biofuel production. The JGI published a partial sequence of Chlamydomonas reinhardtii in 2003; then in 2007 the full genome was sequenced and published in the journal Science . At the …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … through photosynthesis, but only a fraction have been sequenced.  Adriana Lopes dos Santos from Singapore’s … Nanyang Technological University aims to generate genome sequences from underrepresented green algae groups in a wide …
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