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… works closely with DOE computational facilities (e.g., the National Energy Research Scientific Computing Center (NERSC) … DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide …

… a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established … This work was partially supported by awards from US Department of Energy (DOE) Office of Science, Office …

… a Research Scientist position in 2007, she switched gears from metagenomics to single-cell genomics, which is now her … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed … Tanja Woyke is the Microbial Science Program Head as well as our Deputy of User …

… JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … molecular profiles are generated for metabolites extracted from a variety of experimental samples, including organisms … more about our submission guidelines, what you can expect from your results as well as our library standards. …

… increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which … all four core genes. These virophages were found in diverse habitats including the air, plant rhizosphere, wastewater, …

… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated several Phytophthora … in metagenomes? A: Search in metagenomes is available from another JGI portal, IMG:  https://img.jgi.doe.gov 7.  …

… Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or … water availability, temperature variations etc are all more extreme in the field. By having transcriptomics data across … transcriptome analysis and 8 replicates for metabolomics. Why is this? A:  We did a pilot experiment with the JGI to …