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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists … Download plant, algal, fungal and microbial genomes and metagenomes — … GOLD is a web resource for comprehensive access to information regarding genome and metagenome …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the … The DNA Synthesis Program plays a central role in advancing … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … team found that both guilds express similar genes for degrading fungal cell walls, the so-called fungal necromass, …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs
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Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus
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Hymenobacter caeli sp. nov., an airborne bacterium isolated from King George Island, Antarctica.
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Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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