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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … distinguish which gene belongs to each individual microbial species within a community. Therefore, the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …
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JGI announces first round of 2023 New Investigator awardees
… The JGI is eager to work and share our tools with a widening circle of … and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … but currently require input in the ~ 30 – 100ng range. Note that beyond quantity, input quality (i.e., presence of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … rumen microbes are awesome and this is just another example why.” …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model species. The following year saw the beginnings of common …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … organisms in these food webs, said Schmidt. Several whale species, including gray whales and humpbacks, migrate to …
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An analysis of codon bias in six red yeast species
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Phyllosticta citricarpa and sister species of global importance to Citrus
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Evolution and comparative genomics of the most common Trichoderma species
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Coniella lustricola, a new species from submerged detritus
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Amplification and adaptation of centromeric repeats in polyploid switchgrass species
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DNABERT-S: pioneering species differentiation with species-aware DNA embeddings
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