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JGI on the 2021 Highly Cited Researchers List
… associate climate adaptations with switchgrass biology. The information could be useful toward the DOE’s interest in … research consortium that collected and analyzed microbial samples from public transit stations across 60 global … JGI database to investigate viruses detected in the samples. Simon Roux co-organized the Viral EcoGenomics & …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… “This exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal also reviewed and assigned … name and IDs for nearly 20,000 public/private mtagenome biosamples in GOLD. “Besides these, he curated several small …
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Accelerating Metagenomics Discoveries with Deep Learning
… data, or DNA sequencing data gathered from whole samples rather than single cells or isolated strains, is … (CRD), in order to create more useful tools for the bioinformatics community. Other work presented at the workshop … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint … (metatranscriptomes) generated from diverse environmental samples around the world, resulting in a five-fold increase … the planet’s nutrient cycles. While most organism’s genetic information is encoded in DNA, with RNA delivering the …
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Effects of Polar Light Cycle on Microbial Food Web
… producers fueling our planet’s biogeochemical cycles. Water samples from Ace Lake were collected over a 10-year period … top and anoxic water below. Cavicchioli and his team took samples from all three sections of the stratified water and …
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Ancient Algae Reveal Secrets of Plant Evolution
… helped plants thrive under challenging conditions could inform the development of resilient crop varieties able to …
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Cultivating Symbiotic Antarctic Microbes
Using metagenomes recovered directly from environmental samples and cultivated microbes, researchers have been able … haloarchaeon  Halorubrum lacusprofundi . To do this, water samples were collected from the Rauer 1 and Club lakes in …
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Virus-Microbe Interactions of Mud Island Mangroves
… carbon cycling in coastal mangroves. His work centers on samples collected on Mud Island – “it’s essentially a mud …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… from thousands of ecologically diverse metagenomics samples. The work is supported by NIH Common Fund grant … developed for JGI-enabled research involving environmental samples to help uncover the phylogenetic diversity of the … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Taking Stock of the Known and Unknown Microbial Space
… playing key roles in regulating global nutrient cycles. The information gained from understanding the interactions … publicly available in the National Center for Biotechnology Information (NCBI) GenBank collection and on the JGI’s  … recover MAGs by extracting data directly from environmental samples over the years have significantly expanded the known …
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JGI@25: Solving the Mystery of the Missing Oil
Laboratory (Berkeley Lab) were on the scene collecting samples. Terry Hazen, a former Berkeley Lab environmental …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… sequence of the complex switchgrass genome , using samples from common gardens growing across the country. The …
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