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JGI Announces 2025 New Investigator Portfolio
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… and environmental communities that have relevance for DOE’s bioenergy and environmental goals. While he’s very familiar … multiple DOE facilities with a single proposal. From the vantage point of JGI’s 25 years fueling discovery, Anderson …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
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David Goodstein
… mutation in the laboratory. The Plant Cell 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant Gene Atlas: an … the plant kingdom. Nucleic acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks regions of …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… retired Naval Commander retires from Berkeley Lab. On June 24, in what was billed as a typical monthly JGI All-Hands … Division and then to Chief Operating Officer for the Joint BioEnergy Institute and Deputy for Operations Biological …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, … genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) … of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …
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How to Target a Microbial Needle within a Community Haystack
… of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … their environments. Summary The traditional shotgun metagenomics approach to learning more about environmental …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to M.O.). Support was also …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… not occurring at that pace, right. And then, hopefully, 3-400 years down the road we’ll have a steady state where we …
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Training the Next Generation of Talent
… which is best for the task at hand. “There are at least 30-40 programs and it is not clear which are the best to use,” …
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Learning to Look
… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 … in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this …
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