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Pinning Down a Piece of Photosynthesis
… and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … works, though, is much harder to pin down.  Photosynthesis appears to have a lot in common with a Rube Goldberg machine: … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … microbial communities. This revealed key metabolic pathways and metabolites associated with the tree’s stress … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … sequences and obtaining 700 Gb of assemblies. The team skipped the binning process to prevent information loss as the …
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University of California, Merced Internship Program
… Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to … students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed them …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … is an ortholog of known genes, “The gene has now been mapped back in maize as involved in leaf angle,” noted …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of … again how did you pick genomes to be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your … we go about getting it in your system? A: I think the best way is to contact us for multiomics visualization as we want …
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Fungal Friends or Foes in Plant Roots
… health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … lobby have many reasons for being there, but they’re not always immediately apparent. Similarly, the microbes found in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … that I’d never done before from my mentors. Also, there’s always a better way to do something.” Mentors Daniela Cassol, …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … fertilizers. By understanding the genetic and metabolic pathways involved in stress responses, scientists can better …
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