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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … National Laboratory. The JGI consists of around 280 researchers and support staff in the Integrative Genomics …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth … a carbon fixation process known as the C4 pathway, which particularly helps plants thrive in warm, arid environments. … JGI group has been wonderful to collaborate with, and this [project] wouldn’t have been possible without their …
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The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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The Surprising Structure of a Shrub Willow Sex Chromosome
… are potential biofuel feedstocks of interest to the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To engineer them, researchers need to select and breed cultivars for the next … (2017YFC0505203, 2016YFD0600101), and the National Key Project for Basic Research (2012CB114504). The work …
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Enlarging Windows into Understanding Gene Functions
… functions of the genes encoded in the genome sequence is part of the integrative science mission of the U.S. … Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription factors … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… efficient engineering of biofuels. Since 2010, the JGI has partnered with researchers around the world to map out genomes of rumen … Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the …
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Party in the Rhizosphere
There’s a party in the soil, and microbes are the VIPs. They’re … rhizosphere. In this episode, biologist Jennifer Pett-Ridge of Lawrence Livermore National Laboratory has your backstage …
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Tracing the Evolution of Shiitake Mushrooms
… shii tree, a Japanese relative of the oak. These fungi are part of the genus Lentinula, which have evolved to decompose … structures, as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and … award 0000238431 to D.H., the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human … plant genomes. She has appeared on the annual Highly Cited Researchers list assembly by Clarivate Analytics. In 2020, … of the five major cotton lineages. Grimwood was also part of the JGI team that contributed to the multinational …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … JGI colleagues Antonio Camargo and Simon Roux. Kyrpides is part of another project led by Owen White at the University …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … in 2007 to achieve this goal. In less than four years, parts of the shallow portions of the groundwater were nearly … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team …
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