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Enabling pan-repository reanalysis for big data science of public metabolomics data
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … and Inter-organismal interactions. Algal research features prominently among the eleven proposals selected … Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among … article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell …
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Bacillus anthracis genome organization in light of whole transcriptome sequencing
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Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced … students worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to categorize genetic information. … Babu (undergraduate) Mentor: Zhong Wang Click the image to watch the video …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … well that it stands the test of time and is considered the gold standard by the world cotton community. This is one …
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Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative … trees are based upon? A: This is still work in progress as new genomes are being added. We do plan to publish the tree … covered in these tutorials 6.  Q: On the genome synteny page, would it be possible to add a feature to look for …
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Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
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VEGA Symposium
… campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” … uncultivated viral diversity, understand the role of viruses in natural ecosystems, and functionally explore … molecular mechanisms of virus-host interactions and phage-based technologies for microbiome manipulation, the VEGA …
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2025 NeLLi Symposium
…   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … of cellular complexity, the tree of life, cultivation of new lineages and the function of candidate lineages in … Atomic Testing Museum at the Desert Research Institute. Metagenomic and single-cell sequence data have provided a means …
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