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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 …
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iPHoP: A Matchmaker for Phages and their Hosts
… fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To … of each floor, click and drag to look around the space, use the graphic rings to move about the space, and your … the science depicted, click here . <span data-mce-type="bookmark" style="display: inline-block; …
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Prepublication data sharing
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Clustering Categorical Data
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … with. 2. Q: What would a typical turnaround time be for data once samples are in hand at JGI? A: It takes a few … the pandemic. 3. Q: What instrument / method does the JGI use to pre-screen DNA for enrichment? A:  The JGI uses …
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Poisson hurdle model-based method for clustering microbiome features.
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acCRISPR: an activity-correction method for improving the accuracy of CRISPR screens
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BOTany methods: accessible automation for plant synthetic biology
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over …
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