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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … This work was supported by the International Consortium for Sugarcane Biotechnology, as …
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … from these 10 metagenome-assembled genomes (MAGs) representing new potential methanogenic, anaerobic … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Haplotype‐resolved genome assembly of Populus tremula × P. alba reveals aspen‐specific megabase satellite DNA
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Draft genome assembly and annotation of Haematococcus lacustris strain Liv1, an industrial astaxanthin-producing microalga
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are interested … 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … place in the world that can do these types of metagenome assemblies.”    …
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