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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes … cells that give off a much brighter signal. Cells from many natural environments are typically too dim to see by flow … makeup and identifying viruses interacting with these populations. Development of this protocol was enabled by the …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal … Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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New voyages to explore the natural product galaxy
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Population genomics of picophytoplankton unveils novel chromosome hypervariability
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Metabolomics Program
Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to … and bioenergy development. … EcoFABs:  For studying microbe-host (or plant-microbiome) interactions under controlled … but highly recommend using the workflow in  GNPS2 .   … In support of user science, the JGI Metabolomics …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … tobacco. Olpidium itself doesn’t cause much damage to the hosts, but they are carriers of several viruses (e.g., … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy … Laboratory and as an Adjunct Professor at the School of Natural Sciences at the University of California, Merced. … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations
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Remarkably coherent population structure for a dominant Antarctic Chlorobium species
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