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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… the  2022 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … , reveals that C-fern’s size and complexity is not due to whole-genome duplication, as was previously thought. …
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Enlarging Windows into Understanding Gene Functions
… array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first authors Leo …
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, metatranscriptomes and single …
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Whole Community Metatranscriptomes and Lipidomes Reveal Diverse Responses Among Antarctic Phytoplankton to Changing Ice Conditions
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … to functions and fungal species. Initially, mapping RNA sequences this way was challenging, according to Martin. … address some of the most pressing challenges of our time. For more information, please visit  …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … are useful in a wide range of environments.  Collecting and analyzing these samples was a global collaboration that …
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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution
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An Improved Method of RNA Isolation from Loblolly Pine (P. taeda L.) and Other Conifer Species
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … a census of publicly available bacterial and archaeal sequences. Kyrpides heads the JGI’s Microbiome Data Science …
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