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Extreme Scale De Novo Metagenome Assembly
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Omega: an Overlap-graph de novo Assembler for Metagenomics
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Assembling the Marine Metagenome, One Cell at a Time
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Dissolved Inorganic Carbon-Accumulating Complexes from Autotrophic Bacteria from Extreme Environments
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Mapping the Earth’s Hidden Fungal Kingdom
… Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … from completely unrelated organisms. The scale transforms individual genomes from static snapshots into dynamic …
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Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy … simpler (and smaller) models, Miscanthus has a large and complex genome whose evolutionary history and perennial …
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How to Submit Sequencing Samples
… QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … synthase gene family across eucalypt lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, … in other countries for essential oil production. The recent assembly of two Corymbia citriodora subspecies variegata …
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Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs
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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert
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