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Elviz – exploration of metagenome assemblies with an interactive visualization tool
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Advantages and Limits of Metagenomic Assembly and Binning of a Giant Virus
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Isolation and sequencing of a single copy of an introgressed chromosome from a complex genome for gene and SNP identification
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User Executive Committee Charter
JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice … user meeting. The UEC also acts as a liaison to the user community and the broader scientific community and promotes communication and collaboration …
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Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs
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Whole genome assembly from 454 sequencing output via modified DNA graph concept
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How to Submit Sequencing Samples
QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage … Sample Metadata form Sample metadata is collected via spreadsheet or directly via a web interface prior to shipping … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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Biases in genome reconstruction from metagenomic data
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A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
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Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
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