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Measurement of bacterial replication rates in microbial communities
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … (metagenomics) and a chemical labelling approach. The Impact Altiarchaea are abundant and dominant populations in …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of … The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how … partial genomes) from six hypersaline Antarctic lakes. The Impact By collecting and sequencing dominant haloarchaeal …
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SIPs with Standards
… Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are … SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and … and listen to the first two parts ( part 1 is here and part 2 is here ) so you understand what’s happened so far in the …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … including lignin, cellulose and hemicellulose. The Impact N. crassa is the model organism for filamentous …
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Cytochrome P450‐catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.)
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Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)
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QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient
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Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … free-living organisms as had been originally thought. The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in …
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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