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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast … … 2021-  NLM Board of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in …
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality … Information (NCBI) GenBank collection and on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. …
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Plant-Microbial Interactions Group
… and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
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A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses
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A standardized quantitative analysis strategy for stable isotope probing metagenomics
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Phylogenetic and metagenomic analysis of Verrucomicrobia in former  agricultural grassland soil
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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics
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An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. …
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Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris
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