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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … quality scores representing potential genomes, and nearly 44,000 metagenomes. All of the data are publicly available … Information (NCBI) GenBank collection and on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. …
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Improving the Cacao Genome and Phytozome
… (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate brands … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … is now available for comparative purposes on the latest version of the JGI plant portal Phytozome at  …
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Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers
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IMG ER: a system for microbial genome annotation expert review and curation
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Operating Expenses
… FY2025 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program …
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Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades
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Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … DAN: Welcome back to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …
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CSP Functional Genomics
… Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … Biodesign and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the …
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Chordate evolution and the three-phylum system
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