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Sulfide Generation by Dominant Halanaerobium Microorganisms in Hydraulically Fractured Shales
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Next generation sequencing data of a defined microbial mock community
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Mitochondrial ATP generation is more proteome efficient than glycolysis
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … the samples, without being able to distinguish which gene belongs to each individual microbial species within a …
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Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
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Halophytes and heavy metals: A multi‐omics approach to understand the role of gene and genome duplication in the abiotic stress tolerance of Cakile maritima
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… To engineer yeast to do more, and understand genomes in general, Jef … international collaboration, with some artistic endeavors along the way. Eventually, the goal is to create an entirely human-generated yeast genome. …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … depth required). Methylation detection currently only works using subread data, PacBio is working on support to use CCS …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both the DNA and …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … factors and 200 genes (or 209 sigma factor-target gene pairs) had been experimentally verified in S. coelicolor . …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to … to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … on a smaller scale as a proof-of-concept or by allowing the generation of preliminary data for a larger study.” …
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