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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … rot fungi in the genus Lentinula. Dan Rokhsar looked to the evolutionary history of strawberries as part of a study to …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of … their adaptations offers insights into microbial evolution, as well as how Antarctic microbial communities … have a primary replicon (chromosome) that is highly conserved and secondary replicons that are highly variable …
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Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in … While an ever-increasing number of phage and virus genomes have been assembled and reported …
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Particle‐association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … that relate directly and indirectly to genetic diversity, evolution, wild germplasm utilization and increasing the … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Stepping on the Gas to a Circular Economy: Accelerating Development of Carbon-Negative Chemical Production from Gas Fermentation
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Plasmid Copy Number Engineering Accelerates Fungal Polyketide Discovery upon Unnatural Polyketide Biosynthesis
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for … directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … which they have applied and refined in the sequencing and evolutionary analysis of over fifty plant and animal …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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