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… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and … From these assemblies, complete or near-complete population genomes were recovered—termed “metagenome-assembled genomes” …

… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so …

… of chromosomes (they are “polyploid”) and their complex genomes are more difficult to sequence and assemble, in turn … breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical …

… that would allow users to simultaneously run several programs for RNA-Seq assembly to determine which is best for the task at hand. “There are at least 30-40 programs and it is not clear which are the best to use,” he …

… Program in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team …

… datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published …

… 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. … scientists have turned their attention to the pangenomes of plants.  Pangenomes encompass a plant’s genetic diversity beyond a …

… (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic … BioScales project on JGI Genomes Online Database …

… from JGI’s science and production sequencing programs. …

… of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get …

… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy … plant material in herbivore guts. A deeper dive into the genomes and follow-up experiments, recently reported in the …

… and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. …